Hi, I'm having the same issue. In addition to what you've said, I might add the next things:
1. I had Chrome opened, closed it and it kept happening.
2. Some of the logs state high CPU usage, althoug that is not quite what I seen on the meter (both on Logic and Activity Monitor)
These are some of the logs:
7/30/16 11:48:10.947 WindowServer[205]: disable_update_timeout: UI updates were forcibly disabled by application "Vienna Ensemble Pro" for over 1.00 seconds. Server has re-enabled them.
7/30/16 11:48:14.688 WindowServer[205]: common_reenable_update: UI updates were finally reenabled by application "Vienna Ensemble Pro" after 4.74 seconds [0.21fps] (server forcibly re-enabled them after 1.00 seconds [1.00fps])
7/30/16 11:49:06.114 Vienna Ensemble Pro[1298]: modalSession has been exited prematurely - check for a reentrant call to endModalSession:
7/30/16 11:56:03.707 Vienna Ensemble Pro[1298]: Communications error: <OS_xpc_error: <error: 0x7fff7666ab90> { count = 1, contents =
"XPCErrorDescription" => <string: 0x7fff7666af40> { length = 22, contents = "Connection interrupted" }
}>
7/30/16 11:59:01.458 Vienna Ensemble Pro[1298]: modalSession has been exited prematurely - check for a reentrant call to endModalSession:
7/30/16 12:03:38.000 kernel[0]: process Vienna Ensemble [1298] caught causing excessive wakeups. EXC_RESOURCE supressed due to audio playback
7/30/16 12:18:40.000 kernel[0]: process Vienna Ensemble [1298] thread 75451 caught burning CPU!; EXC_RESOURCE supressed due to audio playback
7/30/16 12:54:32.522 Vienna Ensemble Pro[1766]: modalSession has been exited prematurely - check for a reentrant call to endModalSession:
7/30/16 12:54:41.576 Vienna Ensemble Pro[1766]: 12:54:41.575 WARNING: 140: This application, or a library it uses, is using the deprecated Carbon Component Manager for hosting Audio Units. Support for this will be removed in a future release. Also, this makes the host incompatible with version 3 audio units. Please transition to the API's in AudioComponent.h.
7/30/16 13:05:53.729 Vienna Ensemble Pro[1766]: BUG in libdispatch client: kevent[EVFILT_MEMORYSTATUS] add: "Operation not supported" - 0x2d
7/30/16 13:05:53.820 Vienna Ensemble Pro[1766]: GetDYLDEntryPointWithImage(/System/Library/PrivateFrameworks/CacheDelete.framework/CacheDelete,CacheDeleteCopyPurgeableSpaceWithInfo) failed.
7/30/16 13:06:14.150 Vienna Ensemble Pro[1842]: WARNING: The Gestalt selector gestaltSystemVersion is returning 10.9.3 instead of 10.11.3. This is not a bug in Gestalt -- it is a documented limitation. Use NSProcessInfo's operatingSystemVersion property to get correct system version number.